Публикации студентов

Результаты  научно-исследовательской работы студентов ФББ МГУ опубликованы в научных известных, цитируемых журналах

Публикации студентов факультета биоинженерии и биоинформатики МГУ за 2009-2015 гг.

2015

1. A new species of Cyanea jellyfish sympatric to C. capillata in the White Sea
   Kolbasova G.D.; ZALEVSKY A.O.; GAFUROV A.R.; GUSEV P.O.; EZHOVA M.A.; ZHELUDKEVICH A.A.; Konovalova O.P.; Kosobokova K.N.; KOTLOV N.U.; LANINA N.O.; LAPASHINA A.S.; MEDVEDEV D.O.; NOSIKOVA K.S.; NUZHDINA E.O.; Bazykin G.A.; Neretina T.V.
   Polar Biol DOI 10.1007/s00300-015-1707-y
   
   

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2014

1. PocketZebra: a web server for automated selection and classification of subfamily-specific binding sites by bioinformatics analysis of diverse protein families.
   Suplatov, D.; Kirilin, E.; Arbatsky M.; Takhaveev, V.; Svedas, V.
   Nucleic Acids Res. Принято в печать.
   doi 10.1093/nar/gku448

2013

1. Method for site-specific detection of m6A nucleoside presence in RNA based on high-resolution melting (HRM) analysis.
   Golovina, A. Y.; Dzama, M. M.; Petriukov, K. S.; Zatsepin, T. S.; Sergiev, P. V.; Bogdanov, A. A.; Dontsova, O. A.
   Nucleic Acids Res. 2013 Nov 21.
   doi 10.1093/nar/gkt1160
2. Thermo-switchable activity of the restriction endonuclease SsoII achieved by site-directed enzyme modification.
   Abrosimova, L. A.; Monakhova, M. V.; Migur, A. Y.; Wolfgang, W.; Pingoud, A.; Kubareva, E. A.; Oretskaya, T. S.
   IUBMB Life. 2013 Dec;65(12):1012-6.
   doi 10.1002/iub.1222
3. Zebra: a web server for bioinformatic analysis of diverse protein families.
   Suplatov, D.; Kirilin, E.; Takhaveev, V.; Svedas, V.
   J Biomol Struct Dyn. 2013 Sep 13.
   doi 10.1080/07391102.2013.834514
4. Mitochondrial signaling in Saccharomyces cerevisiae pseudohyphae formation induced by butanol.
   Starovoytova, A. N.; Sorokin, M. I.; Sokolov, S. S.; Severin, F. F.; Knorre, D. A.
   FEMS Yeast Res. 2013 Jun;13(4):367-74.
   doi 10.1111/1567-1364.12039
5. Penetrating cations enhance uncoupling activity of anionic protonophores in mitochondria.
   Antonenko, Y. N.; Khailova, L. S.; Knorre, D. A.; Markova, O. V.; Rokitskaya, T. I.; Ilyasova, T. M.; Severina, I. I.; Kotova, E. A.; Karavaeva, Y. E.; Prikhodko, A. S.; Severin, F. F.; Skulachev, V. P.
   PLoS One. 2013 Apr 23;8(4):e61902.
   doi 10.1371/journal.pone.0061902
6. Structural lability of Barley stripe mosaic virus virions.
   Makarov, V. V.; Skurat, E. V.; Semenyuk, P. I.; Abashkin, D. A.; Kalinina, N. O.; Arutyunyan, A. M.; Solovyev, A. G.; Dobrov, E. N.
   PLoS One. 2013 Apr 17;8(4):e60942.
   doi 10.1371/journal.pone.0060942
7. Mitochondrially-encoded protein Var1 promotes loss of respiratory function in Saccharomyces cerevisiae under stressful conditions.
   Litvinchuk, A. V.; Sokolov, S. S.; Rogov, A. G.; Markova, O. V.; Knorre, D. A.; Severin, F. F.
   Eur J Cell Biol. 2013 Apr-May;92(4-5):169-74.
   doi 10.1016/j.ejcb.2013.02.001
8. On the role of the mitochondrial 2-oxoglutarate dehydrogenase complex in amino acid metabolism.
   Araujo, W. L.; Trofimova, L.; Mkrtchyan, G.; Steinhauser, D.; Krall, L.; Graf, A.; Fernie, A. R.; Bunik, V. I.
   Amino Acids. 2013 Feb;44(2):683-700.
   doi 10.1007/s00726-012-1392-x
9. Comparative analysis of context-dependent mutagenesis using human and mouse models.
   Medvedeva, S. A.; Panchin, A. Y.; Alexeevski, A. V.; Spirin, S. A.; Panchin, Y. V.
   Biomed Res Int. 2013;2013:989410.
   doi 10.1155/2013/989410
10. Up-regulation of 2-oxoglutarate dehydrogenase as a stress response.
    Graf, A.; Trofimova, L.; Loshinskaja, A.; Mkrtchyan, G.; Strokina, A.; Lovat, M.; Tylicky, A.; Strumilo, S.; Bettendorff, L.; Bunik, V. I.
    Int J Biochem Cell Biol. 2013 Jan;45(1):175-89.
    doi 10.1016/j.biocel.2012.07.002
11. Comparative analysis of context-dependent mutagenesis in humans and fruit flies.
    Medvedeva, S. A.; Panchin, A. Y.; Alexeevski, A. V.; Spirin, S. A.; Panchin, Y. V.
    Int J Genomics. 2013;2013:173616.
    doi 10.1155/2013/173616
12. Sequence-derived structural features driving proteolytic processing
    A.Belushkin; D.Vinogradov; M.Gelfand; A.Osterman; P.Cieplak; M.Kazanov
    Proteomics, Accepted 28.10.2013
13. A novel intra-U1 snRNP cross-regulation mechanism: Alternative splicing switch links U1C and U1-70K expression
    Rösel-Hillgärtner TD, Hung LH, Khrameeva E, Le Querrec P, Gelfand MS, Bindereif A.
    PLoS Genetics: 9, 10, e1003856, 2013
14. 14.  Hidden Markov models for evolution and comparative genomics analysis
    N.A.Bykova, A.V.Favorov, A.A.Mironov
    PLoS ONE: 8, 6, e65012, 2013

2012

1. Биоинформатический анализ структурных взаимосвязей в удаленных гомологах суперсемейства альфа-бета гидролаз.
   Шаповалова И.В.; Панин Н.В.; Тахавеев В.А.; Мисюра Н.М., Суплатов Д.А.
   Современные проблемы науки и образования (6): 715
2. Computer modeling of transketolase-like protein, TKTL1, a marker of certain tumor tissues.
   Maslova, A. O.; Meshalkina, L. E.; Kochetov, G. A.
   Biochemistry (Mosc). 2012 Mar;77(3):296-9.
   PubMed ; doi 10.1134/S000629791203008X
3. Programmed cell death in plants.
   Fomicheva, A. S.; Tuzhikov, A. I.; Beloshistov, R. E.; Trusova, S. V.; Galiullina, R. A.; Mochalova, L. V.; Chichkova, N. V.; Vartapetian, A. B.
   Biochemistry (Mosc). 2012 Dec;77(13):1452-64. 
   PubMed ; doi 10.1134/S0006297912130044
4. Biases in read coverage demonstrated by interlaboratory and interplatform comparison of 117 mRNA and genome sequencing experiments
   E.E.Khrameeva, M.S.Gelfand
   BMC Bioinformatics, 2012: 13, Suppl 6, S4
5. Spatial proximity and similarity of the epigenetic state of genome domains
   E.E.Khrameeva, A.A.Mironov, G.G.Fedonin, P.Khaitovich, M.S.Gelfand
   PLoS ONE, 2012: 7, 3, e33947
6. Transcriptional regulation of central carbon and energy metabolism in bacteria by redox-responsive repressor Rex
   Ravcheev DA, Li X, Latif H, Zengler K, Leyn SA, Korostelev YD, Kazakov AE, Novichkov PS, Osterman AL, Rodionov DA.
   J Bacteriol. 2012:   194, 5, 1145-57
7. Evidence for widespread association of mammalian splicing and conserved long-range RNA structures
   D.D.Pervouchine, E.E.Khrameeva, M.Yu.Pichugina,  O.V.Nikolaenko, M.S.Gelfand, P.M.Rubtsov, A.A.Mironov
   RNA 2012: 18, 1, 1-15

2011

1. Accumulation of dodecyltriphenylphosphonium in mitochondria induces their swelling and ROS-dependent growth inhibition in yeast.
   Ojovan, S. M.; Knorre, D. A.; Markova, O. V.; Smirnova, E. A.; Bakeeva, L. E.; Severin, F. F.
   J Bioenerg Biomembr. 2011 Apr;43(2):175-80.
   PubMed ; doi 10.1007/s10863-011-9345-8
2. Изучение связывания ДНК факторами транскрипции LacI семейства методами машинного обучения
   Г. Федонин, А. Б. Рахманинова, Ю. Коростелев, О. Лайкова и М. С. Гельфанд
   Молекулярная биология 2011: 45, 4, 724-739

2010

1. Exclusive sequences of different genomes.
   Mitrofanov, S. I.; Panchin, A. Y.; Spirin, S. A.; Alexeevski, A. V.; Panchin, Y. V.
   J Bioinform Comput Biol. 2010 Jun;8(3):519-34.
   PubMed

2009

1. Structure and function of an ADP-ribose dependent transcriptional regulator of NAD metabolism
   N.Huang, J. De Ingeniis, L.Galeazzi, C.Mancini, Y.D.Korostelev, A.B.Rakhmaninova, M.S.Gelfand, A.L.Osterman, D.Rodionov, N.Raffaelli, H.Zhang
   Structure 2009: 17, 7, 939-961

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