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Публикации за 2008

Inhibition of membrane-bound cytochrome c oxidase by zinc ions: high-affinity Zn2+-binding site at the P-side of the membrane.
Vygodina, T. V.; Zakirzianova, W.; Konstantinov, A. A.
FEBS Lett. 2008 Dec 24;582(30):4158-62. Epub 2008 Nov 28.
PubMed; doi 10.1016/j.febslet.2008.11.018

Unexpected link between anaphase promoting complex and the toxicity of expanded polyglutamines expressed in yeast.
Bocharova, N. A.; Sokolov, S. S.; Knorre, D. A.; Skulachev, V. P.; Severin, F. F.
Cell Cycle. 2008 Dec 15;7(24):3943-6. Epub 2008 Dec 12.
PubMed

Mitochondria-targeted plastoquinone derivatives as tools to interrupt execution of the aging program. 5. SkQ1 prolongs lifespan and prevents development of traits of senescence.
Anisimov, V. N.; Bakeeva, L. E.; Egormin, P. A.; Filenko, O. F.; Isakova, E. F.; Manskikh, V. N.; Mikhelson, V. M.; Panteleeva, A. A.; Pasyukova, E. G.; Pilipenko, D. I.; Piskunova, T. S.; Popovich, I. G.; Roshchina, N. V.; Rybina, O. Y.; Saprunova, V. B.; Samoylova, T. A.; Semenchenko, A. V.; Skulachev, M. V.; Spivak, I. M.; Tsybul'ko, E. A.; Tyndyk, M. L.; Vyssokikh, M. Y.; Yurova, M. N.; Zabezhinsky, M. A.; Skulachev, V. P.
Biochemistry (Mosc). 2008 Dec;73(12):1329-42.
PubMed

Mitochondria-targeted plastoquinone derivatives as tools to interrupt execution of the aging program. 4. Age-related eye disease. SkQ1 returns vision to blind animals.
Neroev, V. V.; Archipova, M. M.; Bakeeva, L. E.; Fursova, A. Z. h.; Grigorian, E. N.; Grishanova, A. Y.; Iomdina, E. N.; Ivashchenko, Z. h. N.; Katargina, L. A.; Khoroshilova-Maslova, I. P.; Kilina, O. V.; Kolosova, N. G.; Kopenkin, E. P.; Korshunov, S. S.; Kovaleva, N. A.; Novikova, Y. P.; Philippov, P. P.; Pilipenko, D. I.; Robustova, O. V.; Saprunova, V. B.; Senin, I. I.; Skulachev, M. V.; Sotnikova, L. F.; Stefanova, N. A.; Tikhomirova, N. K.; Tsapenko, I. V.; Shchipanova, A. I.; Zinovkin, R. A.; Skulachev, V. P.
Biochemistry (Mosc). 2008 Dec;73(12):1317-28.
PubMed

Mitochondria-targeted plastoquinone derivatives as tools to interrupt execution of the aging program. 3. Inhibitory effect of SkQ1 on tumor development from p53-deficient cells.
Agapova, L. S.; Chernyak, B. V.; Domnina, L. V.; Dugina, V. B.; Efimenko, A. Y.; Fetisova, E. K.; Ivanova, O. Y.; Kalinina, N. I.; Khromova, N. V.; Kopnin, B. P.; Kopnin, P. B.; Korotetskaya, M. V.; Lichinitser, M. R.; Lukashev, A. L.; Pletjushkina, O. Y.; Popova, E. N.; Skulachev, M. V.; Shagieva, G. S.; Stepanova, E. V.; Titova, E. V.; Tkachuk, V. A.; Vasiliev, J. M.; Skulachev, V. P.
Biochemistry (Mosc). 2008 Dec;73(12):1300-16.
PubMed

Mitochondria-targeted plastoquinone derivatives as tools to interrupt execution of the aging program. 2. Treatment of some ROS- and age-related diseases (heart arrhythmia, heart infarctions, kidney ischemia, and stroke).
Bakeeva, L. E.; Barskov, I. V.; Egorov, M. V.; Isaev, N. K.; Kapelko, V. I.; Kazachenko, A. V.; Kirpatovsky, V. I.; Kozlovsky, S. V.; Lakomkin, V. L.; Levina, S. B.; Pisarenko, O. I.; Plotnikov, E. Y.; Saprunova, V. B.; Serebryakova, L. I.; Skulachev, M. V.; Stelmashook, E. V.; Studneva, I. M.; Tskitishvili, O. V.; Vasilyeva, A. K.; Victorov, I. V.; Zorov, D. B.; Skulachev, V. P.
Biochemistry (Mosc). 2008 Dec;73(12):1288-99.
PubMed

Mitochondria-targeted plastoquinone derivatives as tools to interrupt execution of the aging program. 1. Cationic plastoquinone derivatives: synthesis and in vitro studies.
Antonenko, Y. N.; Avetisyan, A. V.; Bakeeva, L. E.; Chernyak, B. V.; Chertkov, V. A.; Domnina, L. V.; Ivanova, O. Y.; Izyumov, D. S.; Khailova, L. S.; Klishin, S. S.; Korshunova, G. A.; Lyamzaev, K. G.; Muntyan, M. S.; Nepryakhina, O. K.; Pashkovskaya, A. A.; Pletjushkina, O. Y.; Pustovidko, A. V.; Roginsky, V. A.; Rokitskaya, T. I.; Ruuge, E. K.; Saprunova, V. B.; Severina, I. I.; Simonyan, R. A.; Skulachev, I. V.; Skulachev, M. V.; Sumbatyan, N. V.; Sviryaeva, I. V.; Tashlitsky, V. N.; Vassiliev, J. M.; Vyssokikh, M. Y.; Yaguzhinsky, L. S.; Zamyatnin, A. A.; Skulachev, V. P.
Biochemistry (Mosc). 2008 Dec;73(12):1273-87.
PubMed

Non-native glyceraldehyde-3-phosphate dehydrogenase can be an intrinsic component of amyloid structures.
Naletova, I.; Schmalhausen, E.; Kharitonov, A.; Katrukha, A.; Saso, L.; Caprioli, A.; Muronetz, V.
Biochim Biophys Acta. 2008 Dec;1784(12):2052-8. Epub 2008 Aug 6.
PubMed; doi 10.1016/j.bbapap.2008.07.013

Quasi-equilibrium assumption in enzyme kinetics. Necessary and sufficient conditions and accuracy of its application for single-substrate reactions.
Vrzheshch, P. V.
Biochemistry (Mosc). 2008 Oct;73(10):1114-20.
PubMed

Mutants of monomeric red fluorescent protein mRFP1 at residue 66: structure modeling by molecular dynamics and search for correlations with spectral properties.
Khrameeva, E. E.; Drutsa, V. L.; Vrzheshch, E. P.; Dmitrienko, D. V.; Vrzheshch, P. V.
Biochemistry (Mosc). 2008 Oct;73(10):1085-95.
PubMed

Heterogeneity of mitochondrial potential as a marker for isolation of pure cardiomyoblast population.
Khryapenkova, T. G.; Plotnikov, E. Y.; Korotetskaya, M. V.; Sukhikh, G. T.; Zorov, D. B.
Bull Exp Biol Med. 2008 Oct;146(4):506-11.
PubMed

Novel isoenzyme of 2-oxoglutarate dehydrogenase is identified in brain, but not in heart.
Bunik, V.; Kaehne, T.; Degtyarev, D.; Shcherbakova, T.; Reiser, G.
FEBS J. 2008 Oct;275(20):4990-5006. Epub 2008 Sep 9.
PubMed; doi 10.1111/j.1742-4658.2008.06632.x

Identification of replication origins in prokaryotic genomes.
Sernova, N. V.; Gelfand, M. S.
Brief Bioinform. 2008 Sep;9(5):376-91. Epub 2008 Jul 26.
PubMed; doi 10.1093/bib/bbn031

OrthoFocus: program for identification of orthologs in multiple genomes in family-focused studies.
Ivliev, A. E.; Sergeeva, M. G.
J Bioinform Comput Biol. 2008 Aug;6(4):811-24.
PubMed

Positive selection in alternatively spliced exons of human genes.
Ramensky, V. E.; Nurtdinov, R. N.; Neverov, A. D.; Mironov, A. A.; Gelfand, M. S.
Am J Hum Genet. 2008 Jul;83(1):94-8. Epub 2008 Jun 19.
PubMed; doi 10.1016/j.ajhg.2008.05.017

Natural causes of programmed death of yeast Saccharomyces cerevisiae.
Severin, F. F.; Meer, M. V.; Smirnova, E. A.; Knorre, D. A.; Skulachev, V. P.
Biochim Biophys Acta. 2008 Jul;1783(7):1350-3. Epub 2008 Feb 15.
PubMed; doi 10.1016/j.bbamcr.2008.02.001

Microarray retriever: a web-based tool for searching and large scale retrieval of public microarray data.
Ivliev, A. E.; 't, H. o. e. n.; Villerius, M. P.; den, D. u. n. n. e. n.; Brandt, B. W.
Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W327-31. Epub 2008 May 7.
PubMed; doi 10.1093/nar/gkn213

Selection of random RNA fragments as method for searching for a site of regulation of translation of E. coli streptomycin mRNA by ribosomal protein S7.
Surdina, A. V.; Rassokhin, T. I.; Golovin, A. V.; Spiridonova, V. A.; Kraal, B.; Kopylov, A. M.
Biochemistry (Mosc). 2008 Jun;73(6):652-9.
PubMed

Comparative chloroplast genomics and phylogenetics of Fagopyrum esculentum ssp. ancestrale -a wild ancestor of cultivated buckwheat.
Logacheva, M. D.; Samigullin, T. H.; Dhingra, A.; Penin, A. A.
BMC Plant Biol. 2008 May 20;8:59.
PubMed; doi 10.1186/1471-2229-8-59

Thermodynamic and kinetic stability of penicillin acylase from Escherichia coli.
Grinberg, V. Y.; Burova, T. V.; Grinberg, N. V.; Shcherbakova, T. A.; Guranda, D. T.; Chilov, G. G.; Svedas, V. K.
Biochim Biophys Acta. 2008 May;1784(5):736-46. Epub 2008 Feb 12.
PubMed; doi 10.1016/j.bbapap.2008.01.016

Structure-function relationships in the 2-oxo acid dehydrogenase family: substrate-specific signatures and functional predictions for the 2-oxoglutarate dehydrogenase-like proteins.
Bunik, V. I.; Degtyarev, D.
Proteins. 2008 May 1;71(2):874-90.
PubMed; doi 10.1002/prot.21766

Comparative genomic analysis of T-box regulatory systems in bacteria.
Vitreschak, A. G.; Mironov, A. A.; Lyubetsky, V. A.; Gelfand, M. S.
RNA. 2008 Apr;14(4):717-35.
PubMed; doi 10.1261/rna.819308

One more probable structural transition in potato virus X virions and a revised model of the virus coat protein structure.
Nemykh, M. A.; Efimov, A. V.; Novikov, V. K.; Orlov, V. N.; Arutyunyan, A. M.; Drachev, V. A.; Lukashina, E. V.; Baratova, L. A.; Dobrov, E. N.
Virology. 2008 Mar 30;373(1):61-71. Epub 2007 Dec 26.
PubMed; doi 10.1016/j.virol.2007.11.024

Surfactant-induced amorphous aggregation of tobacco mosaic virus coat protein: a physical methods approach.
Panyukov, Y. V.; Nemykh, M. A.; Dobrov, E. N.; Drachev, V. A.
Macromol Biosci. 2008 Feb 11;8(2):199-209.
PubMed; doi 10.1002/mabi.200700145

Investigation of glyceraldehyde-3-phosphate dehydrogenase from human sperms.
Shchutskaya, Y. Y.; Elkina, Y. L.; Kuravsky, M. L.; Bragina, E. E.; Schmalhausen, E. V.
Biochemistry (Mosc). 2008 Feb;73(2):185-91.
PubMed

Site-directed mutagenesis of conserved cysteine residues in NqrD and NqrE subunits of Na+-translocating NADH:quinone oxidoreductase.
Fadeeva, M. S.; Bertsova, Y. V.; Verkhovsky, M. I.; Bogachev, A. V.
Biochemistry (Mosc). 2008 Feb;73(2):123-9.
PubMed

Computational analysis of splicing errors and mutations in human transcripts.
Kurmangaliyev, Y. Z.; Gelfand, M. S.
BMC Genomics. 2008 Jan 14;9:13.
PubMed; doi 10.1186/1471-2164-9-13

Molecular modeling studies of substrate binding by penicillin acylase.
Chilov, G. G.; Stroganov, O. V.; Svedas, V. K.
Biochemistry (Mosc). 2008 Jan;73(1):56-64.
PubMed

Saturation mutagenesis reveals the importance of residues alphaR145 and alphaF146 of penicillin acylase in the synthesis of beta-lactam antibiotics.
Jager, S. A.; Shapovalova, I. V.; Jekel, P. A.; Alkema, W. B.; Svedas, V. K.; Janssen, D. B.
J Biotechnol. 2008 Jan 1;133(1):18-26. Epub 2007 Aug 30.
PubMed; doi 10.1016/j.jbiotec.2007.08.039



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